easyExon - A Java-based GUI tool for processing and visualization of Affymetrix exon array data
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User's Manuals
 
  • easyExon Tutorial (Step-by-Step) 
    		•   first time visit?
  • FAQ for easyExon 
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    Example Datasets
     
    Example: 10 paired normal/cancer samples from colon tissue
    Platform: Human Exon 1.0 ST
    Reference: Affymetrix Human Exon 1.0 ST Array - Support Materials
    Downloads: Exon Level Summary     DABG     Gene Level Summary    
  • Normalized and summarized intensity files
    		•     core    ZIP ZIP ZIP
       extended    ZIP ZIP ZIP
     
    Example:  Collection of 11 human tissues
    (breast, cerebellum, heart, kidney, liver, muscle, pancreas, prostate, spleen, testes and thyroid)
    Platform: Human Exon 1.0 ST
    Reference: Affymetrix Human Exon 1.0 ST Array - Support Materials
    Downloads: Exon Level Summary     DABG     Gene Level Summary    
  • Normalized and summarized intensity files
    		•     core    ZIP ZIP ZIP
       extended    ZIP ZIP ZIP
     
    Example:  Collection of 11 mouse tissues
    (breast, cerebellum, heart, kidney, liver, muscle, pancreas, prostate, spleen, testes and thyroid)
    Platform: Mouse Exon 1.0 ST
    Reference: Affymetrix Mouse Exon 1.0 ST Array - Support Materials
    Downloads: Exon Level Summary     DABG     Gene Level Summary    
  • Normalized and summarized intensity files
    		•     core    ZIP ZIP ZIP
       extended    ZIP ZIP ZIP
     
    Example:  Collection of 11 rat tissues
    (breast, cerebellum, heart, kidney, liver, muscle, pancreas, prostate, spleen, testes and thyroid)
    Platform: Rat Exon 1.0 ST
    Reference: Affymetrix Rat Exon 1.0 ST Array - Support Materials
    Downloads: Exon Level Summary     DABG     Gene Level Summary    
  • Normalized and summarized intensity files
    		•     core    ZIP ZIP ZIP
       extended    ZIP ZIP ZIP

    Related Database and Files
     
  • Database:
    • Human    Mouse    Rat   
  • schema files
    		•  SQL SQL SQL
  • table files
    		•  TAR TAR TAR

  • Installation of Local Database (Step-by-Step)

  • Meta Probeset Files   download
    		•

    Related Programs
     
  • Affymetrix Expression Consloe   
    		•  download
  • Affymetrix Power Tools (APT) software   
    		•  download
  • Integrated Genome Browser IGB   
    		•  download

    References
     
  • Original .CEL files (GCOS flat files) - download
    		•
  • Affymetrix White Paper - Alternative Transcript Analysis Methods for Exon Arrays v1.1 pdf
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    Services & Applications
    ArrayFusion 1.5.7
    SET 1.0.3
    easyExon 1.0.4
    MFSelector 1.0.0



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